edu.ucla.stat.SOCR.JRI
Class Ranalysis

java.lang.Object
  edu.ucla.stat.SOCR.JRI.Ranalysis

public class Ranalysis
extends java.lang.Object

Field Summary

protected static java.lang.String	DEFAULT_ANALYSIS_NAME
protected static java.lang.String	DEFAULT_DATAVALUE_NAME
protected static java.lang.String	DEFAULT_ELEMENT_NAME
protected static java.lang.String	DEFAULT_IN_FNAME
protected static java.lang.String	DEFAULT_OUT_FNAME
protected static java.lang.String	DEFAULT_TEMPLATE_FNAME

Constructor Summary

Ranalysis(org.w3c.dom.Document input_xml, org.w3c.dom.Document template_xml)

Ranalysis(java.lang.String[] Rargs)
Constructor

Ranalysis(java.lang.String[] Rargs, java.lang.String in_fName, java.lang.String t_fName, java.lang.String out_fName)

Method Summary

protected void	anova()
protected void	do_ancova(org.w3c.dom.Document t_xml)
void	do_anova(org.w3c.dom.Document t_xml)
void	do_glm(org.w3c.dom.Document t_xml)
void	do_lm(org.w3c.dom.Document t_xml)
protected void	do_plotdata()
void	do_timeSeries(org.w3c.dom.Document t_xml)
org.w3c.dom.Document	getAnalysisResults()
protected java.lang.String	getTimeSeriesResult(java.lang.String[] s)
protected void	insert(java.lang.String nName, java.lang.String value)
protected void	lm_xml(Rengine re)
protected void	lm()
protected java.lang.String	makeFormulae(java.lang.String command)
protected java.lang.String	normalize(java.lang.String s) Normalizes the given string.
protected int[]	parseInt(java.lang.String[] ss)
protected double[]	parseNumber(java.lang.String[] ss)
void	print(Rengine re, org.w3c.dom.NodeList elements)
protected void	printEl(Rengine re, org.w3c.dom.Element element)
protected void	readInput()
protected void	Rend(Rengine re)
protected void	RLoop(Rengine re)
protected Rengine	Rstart(java.lang.String[] Rargs)
protected void	runXML(org.w3c.dom.Document t_xml)
protected void	runXMLFile(java.lang.String t_fName)
protected void	setInput()

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

DEFAULT_ELEMENT_NAME

protected static final java.lang.String DEFAULT_ELEMENT_NAME

See Also:

Constant Field Values

DEFAULT_ANALYSIS_NAME

protected static final java.lang.String DEFAULT_ANALYSIS_NAME

See Also:

Constant Field Values

DEFAULT_DATAVALUE_NAME

protected static final java.lang.String DEFAULT_DATAVALUE_NAME

See Also:

Constant Field Values

DEFAULT_IN_FNAME

protected static final java.lang.String DEFAULT_IN_FNAME

See Also:

Constant Field Values

DEFAULT_OUT_FNAME

protected static final java.lang.String DEFAULT_OUT_FNAME

See Also:

Constant Field Values

DEFAULT_TEMPLATE_FNAME

protected static final java.lang.String DEFAULT_TEMPLATE_FNAME

See Also:

Constant Field Values

Constructor Detail

Ranalysis

public Ranalysis(java.lang.String[] Rargs)

Constructor

Ranalysis

public Ranalysis(java.lang.String[] Rargs,
                 java.lang.String in_fName,
                 java.lang.String t_fName,
                 java.lang.String out_fName)

Ranalysis

public Ranalysis(org.w3c.dom.Document input_xml,
                 org.w3c.dom.Document template_xml)

Method Detail

getAnalysisResults

public org.w3c.dom.Document getAnalysisResults()

RLoop

protected void RLoop(Rengine re)

Rend

protected void Rend(Rengine re)

Rstart

protected Rengine Rstart(java.lang.String[] Rargs)

runXMLFile

protected void runXMLFile(java.lang.String t_fName)

runXML

protected void runXML(org.w3c.dom.Document t_xml)

readInput

protected void readInput()

setInput

protected void setInput()

do_lm

public void do_lm(org.w3c.dom.Document t_xml)

do_timeSeries

public void do_timeSeries(org.w3c.dom.Document t_xml)

do_glm

public void do_glm(org.w3c.dom.Document t_xml)

do_anova

public void do_anova(org.w3c.dom.Document t_xml)

do_ancova

protected void do_ancova(org.w3c.dom.Document t_xml)

makeFormulae

protected java.lang.String makeFormulae(java.lang.String command)

do_plotdata

protected void do_plotdata()

insert

protected void insert(java.lang.String nName,
                      java.lang.String value)

parseInt

protected int[] parseInt(java.lang.String[] ss)
                  throws java.lang.NumberFormatException

Throws:

java.lang.NumberFormatException

parseNumber

protected double[] parseNumber(java.lang.String[] ss)

print

public void print(Rengine re,
                  org.w3c.dom.NodeList elements)

printEl

protected void printEl(Rengine re,
                       org.w3c.dom.Element element)

getTimeSeriesResult

protected java.lang.String getTimeSeriesResult(java.lang.String[] s)

normalize

protected java.lang.String normalize(java.lang.String s)

Normalizes the given string.

lm_xml

protected void lm_xml(Rengine re)

lm

protected void lm()

anova

protected void anova()