edu.ucla.stat.SOCR.analyses.command.volume
Class FDR

java.lang.Object
  edu.ucla.stat.SOCR.analyses.command.volume.FDR

public class FDR
extends java.lang.Object

Field Summary

protected double[]

data

Constructor Summary

FDR(double[] p, double q)
Create a new FDR object.

Method Summary

double	getNThreshold()
double	getThreshold()
double[]	getThresholdedArray()
double[]	getThresholdedArrayNP()

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

data

protected double[] data

Constructor Detail

FDR

public FDR(double[] p,
           double q)

Create a new FDR object.

Parameters:

p - a double array, the vector of p-values

q - a double, the False Discovery Rate level (e.g., 0.05)

Method Detail

getThreshold

public double getThreshold()

Returns:

p-value threshold based on independence or positive dependence

getThresholdedArray

public double[] getThresholdedArray()

Returns:

Thresholded Array using threshold based on independence or positive dependence

getNThreshold

public double getNThreshold()

Returns:

Nonparametric p-value threshold

getThresholdedArrayNP

public double[] getThresholdedArrayNP()

Returns:

Thresholded Array using Nonparametric p-value threshold